PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC12045_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 866aa MW: 96175.8 Da PI: 8.0861

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC12045_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.1e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl RrC12045_p1 34 KPRLRWTVELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.33	31	91	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-31	31	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.06E-16	33	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-23	34	89	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-7	36	86	IPR001005	SANT/Myb domain
Pfam	PF14379	4.3E-21	140	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
PROSITE profile	PS50850	13.76	390	841	IPR020846	Major facilitator superfamily domain
Pfam	PF00083	6.9E-21	447	845	IPR005828	Major facilitator, sugar transporter-like
SuperFamily	SSF103473	3.27E-37	464	845	IPR020846	Major facilitator superfamily domain
CDD	cd06174	1.94E-21	464	838	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	5.4E-11	468	611	No hit	No description
Gene3D	G3DSA:1.20.1250.20	6.7E-11	671	842	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0022857	Molecular Function	transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MFHAKKPSSM NGSYENRAMC VQGDSGLVLT TDPKPRLRWT VELHDRFVDA VAQLGGPDKA 60 TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEYGDHS TKEGLRGDYA SFLYHASSVM 120 DIQRNVASSS GMISRNMNEM QMEVQRRLHE QLEVQRHLQL RIEAQGKYMQ SILERACQTL 180 AGENMAAAAA GGGGYMGNLG SSSLSAAVGP SPHPLSFPPF QNLNIYGNTT EQVLDHHNFQ 240 NHYIENNAAD TNIYLGKKRP NPSSGNDVRK ALLMWSDQDQ DLSGNQPFDD EHRIQIQMAT 300 HVSTDLDSLS ENNCGELLER LSPRKSPLSP MYKLIVTTSQ RKSQLKGATM ADSSAPLLTH 360 LEDGEEENTS QPLNFDKIFE QSLSGFGLSQ FLQAILVGLA LTFDSQQIFI TVFTDAYPTW 420 HCVDHTVCTP ATTDVCKLPR SAWDWDRGFK GKSVISEFDL ECSSSFLRGL PTSAFYIGSI 480 VGGVFMAMIP DGFLGRKQLL FYTTLAMSLT GISIFFSTSI WSYAVLKFAI GFARSQTGTY 540 AFNLIGERVS TEWRPRATMI PFTLSVLGFM SLSGISFLVR HASWRVIYLC TSVPAAIHSI 600 CIYFFALESP RWLRVQGNYA EAFEVLKRIS PGKRGYLESL SSRLPSKETL EQSPSSSIMD 660 LFVRKWAFRR TVVVMIIMFG LGMMYYGVPL AVRDIKVNMY LSEALNAMVE LPTFVITPIL 720 LEKFNRRSSV LANCLVGGAL GVFCFVLTLL GRTNMAFVFE LCSFFCARIG FNLMAVYLIE 780 MFPTCVRNFA TTMLRLAVVV GGACCPIIAS VGRNVPSISF AVFGFVVSGL GFFVLLLPET 840 RGSSLCDTMD EQEQSDQTLK ASHASC

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MFHAKKPSSM NGSYENRAMC VQGDSGLVLT TDPKPRLRWT VELHDRFVDA VAQLGGPDKA  60
TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEYGDHS TKEGLRGDYA SFLYHASSVM  120
DIQRNVASSS GMISRNMNEM QMEVQRRLHE QLEVQRHLQL RIEAQGKYMQ SILERACQTL  180
AGENMAAAAA GGGGYMGNLG SSSLSAAVGP SPHPLSFPPF QNLNIYGNTT EQVLDHHNFQ  240
NHYIENNAAD TNIYLGKKRP NPSSGNDVRK ALLMWSDQDQ DLSGNQPFDD EHRIQIQMAT  300
HVSTDLDSLS ENNCGELLER LSPRKSPLSP MYKLIVTTSQ RKSQLKGATM ADSSAPLLTH  360
LEDGEEENTS QPLNFDKIFE QSLSGFGLSQ FLQAILVGLA LTFDSQQIFI TVFTDAYPTW  420
HCVDHTVCTP ATTDVCKLPR SAWDWDRGFK GKSVISEFDL ECSSSFLRGL PTSAFYIGSI  480
VGGVFMAMIP DGFLGRKQLL FYTTLAMSLT GISIFFSTSI WSYAVLKFAI GFARSQTGTY  540
AFNLIGERVS TEWRPRATMI PFTLSVLGFM SLSGISFLVR HASWRVIYLC TSVPAAIHSI  600
CIYFFALESP RWLRVQGNYA EAFEVLKRIS PGKRGYLESL SSRLPSKETL EQSPSSSIMD  660
LFVRKWAFRR TVVVMIIMFG LGMMYYGVPL AVRDIKVNMY LSEALNAMVE LPTFVITPIL  720
LEKFNRRSSV LANCLVGGAL GVFCFVLTLL GRTNMAFVFE LCSFFCARIG FNLMAVYLIE  780
MFPTCVRNFA TTMLRLAVVV GGACCPIIAS VGRNVPSISF AVFGFVVSGL GFFVLLLPET  840
RGSSLCDTMD EQEQSDQTLK ASHASC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: During drought, cold and salt stress treatments. {ECO:0000269\|PubMed:18710496}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443572.1	0.0	PREDICTED: organic cation/carnitine transporter 5-like
Swissprot	Q9SAK7	0.0	OCT5_ARATH; Organic cation/carnitine transporter 5
TrEMBL	A0A0D3CVT8	0.0	A0A0D3CVT8_BRAOL; Uncharacterized protein
STRING	Bo6g081040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5044	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	0.0	G2-like family protein

Publications ? help Back to Top
Lelandais-Brière C, et al. Disruption of AtOCT1, an organic cation transporter gene, affects root development and carnitine-related responses in Arabidopsis. Plant J., 2007. 51(2): p. 154-64 [PMID:17521409] Küfner I,Koch W Stress regulated members of the plant organic cation transporter family are localized to the vacuolar membrane. BMC Res Notes, 2008. 1: p. 43 [PMID:18710496]