PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12135_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 191aa    MW: 21486.9 Da    PI: 4.1389
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12135_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18454256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrdps+   r r++lg+f taeeAa  +++a+ +++g+
  RrC12135_p3  4 KYRGVRRRP-WGKFAAEIRDPST---RSRVWLGTFVTAEEAAMVYDRAAIRFRGH 54
                 8********.**********976...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.733461IPR001471AP2/ERF domain
PfamPF008477.7E-12454IPR001471AP2/ERF domain
CDDcd000182.51E-31459No hitNo description
Gene3DG3DSA:3.30.730.105.3E-28459IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-20460IPR016177DNA-binding domain
SMARTSM003802.2E-34467IPR001471AP2/ERF domain
PRINTSPR003673.2E-10516IPR001471AP2/ERF domain
PRINTSPR003673.2E-102743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
PAVKYRGVRR RPWGKFAAEI RDPSTRSRVW LGTFVTAEEA AMVYDRAAIR FRGHNAQTNI  60
LAPPPPPPPV IDLETVSRCD SASQSLRSPT SVLRFNANEE TEVEIEPIEL SSPASLFPNP  120
YSLPDLCLAG ECFWDSETPP EPLFLDEIEI HKPVLNPVVP KEENEPEDFS FDLSEDFDAS  180
PWDVDNFFEN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20559358ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893581e-131AC189358.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490477.11e-124PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3749e-75CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A0D3DUW21e-110A0A0D3DUW2_BRAOL; Uncharacterized protein
STRINGBo8g096140.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.12e-54cytokinin response factor 6