PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1214_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 365aa MW: 39711.9 Da PI: 4.5173

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1214_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48	2.7e-15	205	260	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr+rr+ +NRe+ArrsR+RK++ + L+ v +L e ++L k+l ++++v++ RrC1214_p1 205 DVKRARRMLSNRESARRSRRRKQEHMSDLASQVGQLRDEHSTLLKRLGAMNQKVST 260 68*********************************************999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-18	203	267	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	205	259	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-11	206	258	No hit	No description
Pfam	PF00170	4.3E-13	206	259	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.1E-12	207	259	No hit	No description
PROSITE pattern	PS00036	0	210	225	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	3.1E-11	274	333	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MKSGFSADDS TDSFCPPPSP PQAPGDGMTR SQSEWAFQML LEEISGSSIS STDNATGRSS 60 PHVQSESSVT KPEEPSSDDV VEIQKPQPHN GSRNRTPPSS SVDEMDPKFL ESKLELACAA 120 AVALRVGTVT PEYLSASKQV SPVGSETQGS QMSPAVSSVS DAPSLDTHRQ QDIQSRLATS 180 VSDDSDDEDP DGETVTTVDA DDPTDVKRAR RMLSNRESAR RSRRRKQEHM SDLASQVGQL 240 RDEHSTLLKR LGAMNQKVST AVVDNRVLKA ELETMRTKVK MAEDTVKRMT GINPMLLATP 300 YIVPFDRTLM DSSQPNLNQP DMIPNQGSDN ESFASNTVVT LETSCIVFET LPQLDLEAGK 360 NKPQE

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MKSGFSADDS TDSFCPPPSP PQAPGDGMTR SQSEWAFQML LEEISGSSIS STDNATGRSS  60
PHVQSESSVT KPEEPSSDDV VEIQKPQPHN GSRNRTPPSS SVDEMDPKFL ESKLELACAA  120
AVALRVGTVT PEYLSASKQV SPVGSETQGS QMSPAVSSVS DAPSLDTHRQ QDIQSRLATS  180
VSDDSDDEDP DGETVTTVDA DDPTDVKRAR RMLSNRESAR RSRRRKQEHM SDLASQVGQL  240
RDEHSTLLKR LGAMNQKVST AVVDNRVLKA ELETMRTKVK MAEDTVKRMT GINPMLLATP  300
YIVPFDRTLM DSSQPNLNQP DMIPNQGSDN ESFASNTVVT LETSCIVFET LPQLDLEAGK  360
NKPQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	226	RRSRRRKQ
2	221	226	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269\|PubMed:12657652, ECO:0000269\|PubMed:19261733, ECO:0000269\|PubMed:19531597}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018473452.1	0.0	PREDICTED: basic leucine zipper 25-like isoform X2
Swissprot	Q9M1G6	1e-69	BZP25_ARATH; Basic leucine zipper 25
TrEMBL	A0A078FPZ6	1e-137	A0A078FPZ6_BRANA; BnaC03g21720D protein
STRING	Bo3g032910.1	1e-137	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20257	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54620.1	7e-53	basic leucine zipper 25

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Jain P, et al. A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation. Sci Rep, 2017. 7(1): p. 14343 [PMID:29084982] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]