PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12193_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 30220.4 Da    PI: 8.5778
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12193_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.3e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr+g+lKKA+E+Sv+Cdaeva+++fs++gkl+eys+
  RrC12193_p1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVMCDAEVALVVFSHKGKLFEYST 59
                 79***********************************************96 PP
2K-box106.92.4e-35771743100
        K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +++  s e+  + +++ e+++Lk++ie L+r+qRh+lGedL+ +s keLq+LeqqL+++lk+iRs+Kn+l++++i+elq+kek++qe+n +L+k+++e
  RrC12193_p1  77 ERQLISPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMYDSINELQRKEKAIQEQNSMLSKQIKE 174
                  5666676777789**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.763161IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-33288IPR002100Transcription factor, MADS-box
CDDcd002653.69E-41279No hitNo description
PRINTSPR004045.0E-30323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.0E-3084172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.71488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVMCD AEVALVVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL ISPESDVNTN WSMEYNRLKA KIELLERNQR HYLGEDLQAM  120
SSKELQNLEQ QLDTALKHIR SRKNQLMYDS INELQRKEKA IQEQNSMLSK QIKEREKILR  180
AQQEQWDQQN HGHNMPPPPP PQQHQIQQPY MLSHQPSPFL NMGGLYQEED PMTMRRNELD  240
LSLEPVYNCN LGCFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX814800.0X81480.1 S.alba ap1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468274.10.0PREDICTED: floral homeotic protein APETALA 1
SwissprotP0DI141e-179AP1_BRARP; Floral homeotic protein APETALA 1
TrEMBLA0A0C5PW810.0A0A0C5PW81_LEPSV; Apetala 1
STRINGBostr.10273s0459.1.p1e-179(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-161MIKC_MADS family protein