PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12265_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 240aa    MW: 27231.5 Da    PI: 8.9028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12265_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.51.9e-152060141
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                     +g+WT+eEd ll+d+v+++G g+W+++a+  g++R +k+c+
      RrC12265_p1 20 KGPWTAEEDRLLIDYVRLHGEGRWNSVAKLAGLKRNGKSCR 60
                     79******************************99******8 PP
2Myb_DNA-binding29.51.7e-0960832347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W+tIar ++ gRt++++k++w+++
      RrC12265_p1 60 RWSTIARSLP-GRTDNEIKNYWRTH 83
                     4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6581588IPR017930Myb domain
SuperFamilySSF466893.44E-171780IPR009057Homeodomain-like
SMARTSM007179.3E-181986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-151960IPR009057Homeodomain-like
PfamPF002491.2E-132060IPR001005SANT/Myb domain
CDDcd001676.99E-132284No hitNo description
Gene3DG3DSA:1.10.10.608.2E-116184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSLWGVMGAG WGTVEEGWRK GPWTAEEDRL LIDYVRLHGE GRWNSVAKLA GLKRNGKSCR  60
WSTIARSLPG RTDNEIKNYW RTHFKKKTKS PTNNAEKTKN RILKRQQFQQ QRQMELQQEQ  120
QLLQLNQIDM KKIMSLLEED NNHNNGDNNF SSSSSGSSGE GGAFYVPHQI THSTTNSGYD  180
SNGNGLFRVV PMPLPEANLH EEYAIWDGLW NLDLEGQGSF SGGACVPRKP CFQNLTIPFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894911e-154AC189491.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437646.11e-132PREDICTED: myb-related protein 305-like
TrEMBLM4EHV41e-128M4EHV4_BRARP; Uncharacterized protein
STRINGBra028369.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.16e-97myb domain protein 305