PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12459_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 393aa    MW: 43577.7 Da    PI: 4.6123
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12459_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.4e-29253309258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDg++WrKYGqK+v+g+ +prsYYrCt++gC+vkk+vers ++ k+v+ +Y g H+h
  RrC12459_p1 253 DDGFRWRKYGQKVVTGNANPRSYYRCTYTGCKVKKNVERSVDNVKFVVAIYDGIHEH 309
                  8*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28238311IPR003657WRKY domain
SuperFamilySSF1182909.29E-25246312IPR003657WRKY domain
PROSITE profilePS5081127.692247312IPR003657WRKY domain
SMARTSM007741.2E-31252311IPR003657WRKY domain
PfamPF031066.9E-22253309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSDYDGILID DWSPQSSPSI REILATLDQN YSGLKPISEM FPQTNLSTDP QSKQISGGLS  60
DRISARLGFD IPPLEIESIS PSPILVISPG FSFSPFFQSP NMLSNSSSQI IPLCSIPNDA  120
PLETVESSVD AHATMIISNN NLSHQPMNVD LHPQGGSDDI PMEGSVSVTS HEANVDPIGA  180
PLVPSFDSEV LDETDIMNLI SFESGVEDHN IIVVEPSSRM RRENMVTNMI GVRRRNKAQN  240
VIIQVESEED HPDDGFRWRK YGQKVVTGNA NPRSYYRCTY TGCKVKKNVE RSVDNVKFVV  300
AIYDGIHEHV PPPERIRKSS TKKQSGSSMS QDPSNQTLGL GMLPSLPANQ NHVFMNRDDE  360
TNTDRVISEG TELYKAIWEQ LFPFFGFNPY GKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-21243312877Probable WRKY transcription factor 4
2lex_A3e-21243312877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724799.20.0probable WRKY transcription factor 10
TrEMBLA0A3P6BK530.0A0A3P6BK53_BRAOL; Uncharacterized protein
STRINGBo3g180930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.19e-61WRKY DNA-binding protein 10