PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12495_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 210aa    MW: 24150.2 Da    PI: 9.1864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12495_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.6e-0697119123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  RrC12495_p1  97 FVCEICNKGFQRDQNLQLHRRGH 119
                  89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.4E-696119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.29E-796119No hitNo description
PROSITE profilePS5015710.94997119IPR007087Zinc finger, C2H2
PfamPF121712.6E-597119IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01797119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM00355120139169IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4162195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.29E-7169194No hitNo description
SMARTSM00355180174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMNEDILLHQ QVHQQHEENM SNLTSASGDQ ASVSSGNRTE VSGSNYFPHH HQQEEQQQFI  60
APESQPQKKR RNQPGNPDPE SEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN  120
LPWKLKQRPN KEVIRKKVYV CPEASCVHHD PSRALGDLTG IKKHFFRKHG EKKWKCDKCS  180
KKYAVQSDCK AHSKTCGTKE YRCDCGTIFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-19170210343Zinc finger protein JACKDAW
5b3h_F4e-19170210343Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123136KLKQRPNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646412.11e-141protein indeterminate-domain 11-like isoform X2
RefseqXP_022550964.11e-141protein indeterminate-domain 11-like isoform X1
RefseqXP_022550965.11e-141protein indeterminate-domain 11-like isoform X1
SwissprotQ9LRW71e-129IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A3P6FI341e-140A0A3P6FI34_BRAOL; Uncharacterized protein
STRINGBo1g134920.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-117indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]