PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12529_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 282aa    MW: 32541.3 Da    PI: 5.2593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12529_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.41.4e-4961391128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r nratksgyWkatgkd++++++ 
  RrC12529_p1   6 LPPGFRFHPTDEELVGYYLHRRNEGLEIEL-EIIPLMDLYKFDPWELPeKsFLPNRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGKDRNIICQs 102
                  79****************************.99**************95334556888**************************************85 PP

          NAM  96 .kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                   +         g++ktLvfy grap g +t+W mheyrl
  RrC12529_p1 103 sS--SssspiSGCRKTLVFYLGRAPFGGRTEWAMHEYRL 139
                  51..3455669**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-563163IPR003441NAC domain
PROSITE profilePS5100555.3186163IPR003441NAC domain
PfamPF023655.7E-277139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MARSYLPPGF RFHPTDEELV GYYLHRRNEG LEIELEIIPL MDLYKFDPWE LPEKSFLPNR  60
DMEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRNIIC QSSSSSSSPI SGCRKTLVFY  120
LGRAPFGGRT EWAMHEYRLF DSDSSEKSRN FKGDFALCRV VKRNEVTLKK CEASSLEVPD  180
DPLANNVDIP CEARYTGTGP CDAHNTLRAS PDFILESSTK GNSQSQTEEN SGFQVFALPE  240
FDYPSEFFAD LNFDRGMENP FTFVNYQEAH VNDEVINYGV LR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-48616917171NO APICAL MERISTEM PROTEIN
1ut4_B8e-48616917171NO APICAL MERISTEM PROTEIN
1ut7_A8e-48616917171NO APICAL MERISTEM PROTEIN
1ut7_B8e-48616917171NO APICAL MERISTEM PROTEIN
3swm_A8e-48616920174NAC domain-containing protein 19
3swm_B8e-48616920174NAC domain-containing protein 19
3swm_C8e-48616920174NAC domain-containing protein 19
3swm_D8e-48616920174NAC domain-containing protein 19
3swp_A8e-48616920174NAC domain-containing protein 19
3swp_B8e-48616920174NAC domain-containing protein 19
3swp_C8e-48616920174NAC domain-containing protein 19
3swp_D8e-48616920174NAC domain-containing protein 19
4dul_A8e-48616917171NAC domain-containing protein 19
4dul_B8e-48616917171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00175DAPTransfer from AT1G32510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026842e-78CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D142e-78AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449878.10.0PREDICTED: NAC domain-containing protein 86
SwissprotO496972e-86NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A0D3DKT50.0A0A0D3DKT5_BRAOL; Uncharacterized protein
STRINGBo8g028730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150291719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.11e-147NAC domain containing protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]