PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1254_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 386aa MW: 42438.2 Da PI: 6.6521

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1254_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.0005	268	303	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq RrC1254_p2 268 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 303 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	253	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-9	263	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.23E-5	263	307	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-6	268	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MNRGVSESSP VLQQLMAAGN PNWWKVSGDM RPPPPFMGHQ QGPLPPQMTH NNNYLRPRMM 60 PTLLPHFLPY PATSSSPSLT NNPNLSSWLE SNDLPPESWS ISQLLLGGLM MGEEERSEIM 120 NHHNHHDGQH HHSFEGKIRL ENWEEQVLSH QQASMGVVDI KQEGIVNNNN GHHHLICSPN 180 SPPNKSCVTT TTTTSLNSID DNNTTNNNNS MFDFSSNHNG LNLSEGRHTP PDLSSECNSL 240 EIGGSTNKKP RLQPSPSSQS TLKVRKEKLG GRIAALHQLV SPFGKTDTAS VLSEAIGYIR 300 FLQSQIELQG DGSCLFPEDP GQLVNDQCMK RRTVSSSTDN QNANEKPKKD LRSRGLCIVP 360 ISCSLQVGSD NGADYWAPAF GSAGFQ

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MNRGVSESSP VLQQLMAAGN PNWWKVSGDM RPPPPFMGHQ QGPLPPQMTH NNNYLRPRMM  60
PTLLPHFLPY PATSSSPSLT NNPNLSSWLE SNDLPPESWS ISQLLLGGLM MGEEERSEIM  120
NHHNHHDGQH HHSFEGKIRL ENWEEQVLSH QQASMGVVDI KQEGIVNNNN GHHHLICSPN  180
SPPNKSCVTT TTTTSLNSID DNNTTNNNNS MFDFSSNHNG LNLSEGRHTP PDLSSECNSL  240
EIGGSTNKKP RLQPSPSSQS TLKVRKEKLG GRIAALHQLV SPFGKTDTAS VLSEAIGYIR  300
FLQSQIELQG DGSCLFPEDP GQLVNDQCMK RRTVSSSTDN QNANEKPKKD LRSRGLCIVP  360
ISCSLQVGSD NGADYWAPAF GSAGFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352629	0.0	AK352629.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-N24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447360.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	0.0	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A3P6GHG9	0.0	A0A3P6GHG9_BRAOL; Uncharacterized protein
STRING	Bo01098s010.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-180	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]