PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12599_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 460aa    MW: 51760.3 Da    PI: 6.5799
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12599_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43e-16741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  RrC12599_p1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                 ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-11547No hitNo description
CDDcd002022.37E-16654No hitNo description
PfamPF003205.2E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.1E-13740IPR013088Zinc finger, NHR/GATA-type
PfamPF139191.0E-7236313IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RADDINDHRA  60
PRMMLINGMP LNKKTPKRKP YQENFTVKRT NNGLKKRALD ELEASNRSSS GSVVSNSESC  120
DQSNAWETTF PCKKRTCVLG RPKAASSVEK LTKDLYSILQ EQQSSCLSGT SEEDLLYENE  180
SPMVIGHGSV LLRDPHEETE ASSLLVDSSR SSSIRSAEFV VKRGQRSLNF GCRTKSQVLG  240
RHKLPLCNID LKDVFNYDEF IENFTMEEQQ KLMKLLPEVD SVDLPDSLRS MFECSQFREN  300
FSLFQQLVAD GVFETCSPSF SSSGSDFKTL AKLALSDPNK SHLLESYHML KEQRKGIEET  360
VTKPSDNHSL VTIERPCESL NQNFLETRAV MKSPKEVMKI RSKHMETNET IENSVSSFNQ  420
MSYGGSMAFS YEDNDISDQD LLLDVPSNGS YPQAELLHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892610.0AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478684.10.0PREDICTED: GATA transcription factor 27-like isoform X1
RefseqXP_018478690.10.0PREDICTED: GATA transcription factor 27-like isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A397Z3Y30.0A0A397Z3Y3_BRACM; Uncharacterized protein
STRINGBo7g077300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27