PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12625_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 124aa    MW: 14410.3 Da    PI: 5.6921
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12625_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.77.1e-11103124122
                  ---SS-EEEEEEE--TT-SS-E CS
         WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                  ldDgy+WrKYG+K+++gs+fpr
  RrC12625_p1 103 LDDGYKWRKYGKKPIRGSPFPR 124
                  59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-993124IPR003657WRKY domain
PROSITE profilePS5081113.1598124IPR003657WRKY domain
SuperFamilySSF1182907.32E-8101124IPR003657WRKY domain
PfamPF031061.6E-6104124IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MNYPSNPNPS FIDFPETFAS DDYDDAFQMI MEQISLEDHS PTLSWNSCEK LLATEITSPL  60
QTNLVTSPMS LEIEDKTEIK KRKRHKDDQI IHVFKTKSIE VALDDGYKWR KYGKKPIRGS  120
PFPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300661e-156KF430066.1 Brassica rapa WRKY transcription factor 59 (WRKY59) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482206.13e-88PREDICTED: probable WRKY transcription factor 59
SwissprotQ9SJ092e-44WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLA0A078FSM52e-75A0A078FSM5_BRANA; BnaA04g12540D protein
TrEMBLM4ENA32e-75M4ENA3_BRARP; Uncharacterized protein
TrEMBLV5RF012e-75V5RF01_BRACM; WRKY transcription factor 59
STRINGBra030273.1-P3e-76(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.11e-46WRKY DNA-binding protein 59