PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12626_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 156aa    MW: 17979.4 Da    PI: 5.3296
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12626_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM331.7e-101614010128
          NAM  10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
                  +d+e++  +L++k+eg+ + +   i e+  ++y+ ePw Lp+  +     + +ew +  k ++++      + + ++g W   g+   + s+ ++e +
  RrC12626_p1  16 SDSEIIEGFLRPKIEGEAVAIPGLIVELgeELYTREPWLLPQtdH--PilNPREWLYLGKPNRNNV---PVEGVDHEGCWVRIGSAVLIRSEeTDEII 108
                  699***************9998889998778*********94332..1346779988888777553...55667789********9999998556668 PP

          NAM 101 glkktLvfy...kgrapkg.ektdWvmheyrl 128
                  g    + +    kg+++ + + ++W+m+eyrl
  RrC12626_p1 109 GGTSRFRYRfrnKGDQHAPlRWSNWFMKEYRL 140
                  8888888876664443333168********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.1227156IPR003441NAC domain
SuperFamilySSF1019413.92E-1716153IPR003441NAC domain
PfamPF023658.3E-616140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MTTRMAGFGE EESGISDSEI IEGFLRPKIE GEAVAIPGLI VELGEELYTR EPWLLPQTDH  60
PILNPREWLY LGKPNRNNVP VEGVDHEGCW VRIGSAVLIR SEETDEIIGG TSRFRYRFRN  120
KGDQHAPLRW SNWFMKEYRL FNPTPHVICK ITEKLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454870.11e-102PREDICTED: uncharacterized protein LOC108826005
TrEMBLM4EA931e-101M4EA93_BRARP; Uncharacterized protein
STRINGBra025701.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.14e-46NAC domain containing protein 27