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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC12665_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
AP2 |
| Protein Properties |
Length: 439aa MW: 48099 Da PI: 7.756 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC12665_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.4 | 6.5e-17 | 121 | 170 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
RrC12665_p1 121 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 170
78*******************......55***********************9997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 439 aa
Download sequence Send
to blast |
MLLDLNLNDV VSAESTHMDE SVTSNSSVVN AEASSCIDGE EELCSSTRAV KFQFEILKGG 60
EEEDGSDVMK KTKEFFPIAQ SSVDISFQRG GGDDAAAAMV VMQPPAQPVK KSRRGPRSKS 120
SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAVKFRG LEADINFIIS 180
DYEEDLKQMA NLSKEELVQV LRRQSSGFSR SNSRYQGVAL QKIGGWGAQM KQFNGNMGYD 240
KAVTKWSGRE VASLIEPHAS RMIPEAANVK LDLSLGISLS LGDGPKQKDN APRLHNAPNS 300
VMMENHINMA AATCDTSFNL LKRGSDHLIN RHVLHPSAFF SPMERTPDKG FMLPSPQSFS 360
ARTDATTAIA SPLYSSNAAS SGFSPSATRP PSSSTAPPLH PSQPFLNLNM PGFYLIHPSD 420
HASQQHLHHL MNNRPQPPP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK352946 | 0.0 | AK352946.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B14. |
