PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12761_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 280aa    MW: 31889.1 Da    PI: 8.5722
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12761_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien   rqvtfskRr+g+lKKA+ELSvLCd evavi+fs++gkl+e+ss
  RrC12761_p2  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDSEVAVIVFSKSGKLFEFSS 59
                 79***********************************************96 PP
2K-box74.53.1e-258817612100
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + +e+ ++e++ Lk+ei++Lq+++ +++G++L+ L lkeLq+LeqqL+ sl ++R++K+ ll++q+ee++ ke++++ en++Lr++++e
  RrC12761_p2  88 NLQEEDCTEVDLLKSEISKLQEKHLQMQGKGLNALCLKELQHLEQQLNLSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQE 176
                  5578899*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.59161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-31276IPR002100Transcription factor, MADS-box
CDDcd002651.04E-41274No hitNo description
PRINTSPR004041.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-1689174IPR002487Transcription factor, K-box
PROSITE profilePS5129713.10590180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD SEVAVIVFSK SGKLFEFSST  60
KCMKKTLLRY SNYNPSPDAP LINYKPENLQ EEDCTEVDLL KSEISKLQEK HLQMQGKGLN  120
ALCLKELQHL EQQLNLSLIS VRERKELLLT KQLEESRLKE QRAELENETL RRQVQELRSF  180
LPSINRNYVP SYITCFAIDP KNSLVNNSGL DDTNYSLQKT NSDTTLQLGL PGEAQARRRS  240
EGNRESPSSD SATTSTTNCT EDHLKTKANG SPFSHREIWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-23174173MEF2C
5f28_B2e-23174173MEF2C
5f28_C2e-23174173MEF2C
5f28_D2e-23174173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU226810.0U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444335.10.0PREDICTED: agamous-like MADS-box protein AGL15
SwissprotQ392951e-138AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A0D3EFP61e-158A0A0D3EFP6_BRAOL; Uncharacterized protein
STRINGBo9g166450.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-120AGAMOUS-like 15