PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12788_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 340aa    MW: 38324.2 Da    PI: 4.8995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12788_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.8e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W ++Ed++l  ++++ G g W++I++  g++R++k+c++rw +yl
      RrC12788_p1 15 KGPWMPDEDDKLMACIHKNGYGKWRSIPNLAGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding58.12e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T eE+  +v+++++lG++ W++Ia++++ gRt++++k++w++++
      RrC12788_p1  68 RGEFTDEEESTIVKLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-22765IPR009057Homeodomain-like
PROSITE profilePS5129418.3581062IPR017930Myb domain
SuperFamilySSF466897.86E-3012109IPR009057Homeodomain-like
SMARTSM007172.6E-101464IPR001005SANT/Myb domain
PfamPF002492.3E-141562IPR001005SANT/Myb domain
CDDcd001671.67E-81762No hitNo description
PROSITE profilePS5129427.26963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2766117IPR009057Homeodomain-like
SMARTSM007173.9E-1767115IPR001005SANT/Myb domain
PfamPF002491.7E-1668112IPR001005SANT/Myb domain
CDDcd001675.47E-1370113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWMP DEDDKLMACI HKNGYGKWRS IPNLAGLNRC GKSCRLRWMN  60
YLRPDIRRGE FTDEEESTIV KLHALLGNKW SKIASHLPGR TDNEIKNYWN THMRKKMLQM  120
GIDPITHEPR TNDLSPILDV SQMLAAAIGN GQFGNNTFFN NNTAVEDLLK LQLIHKMLQI  180
ITPKTLPNIN SFNTNSLNTK PEPVVDNIKT NPVDPKPKLA AAGQLNAIEP HVFTSQTENE  240
DFMPSFEDVW DCTEDNQLPG LVMVSQENLN YQTGAAMMPD YYGDQLHEVP STGSISVTPE  300
TSGLNYPGMT QQSSGSDVLE DWEKFLDDET TDSCWKSFLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-27151174105C-Myb DNA-Binding Domain
1msf_C4e-27151174105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136872.10.0PREDICTED: transcription factor MYB39
RefseqXP_013741326.10.0transcription factor MYB39-like
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A0D3DEP50.0A0A0D3DEP5_BRAOL; Uncharacterized protein
TrEMBLQ2A9680.0Q2A968_BRAOL; Myb family transcription factor
STRINGBo7g105430.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39