PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12792_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 233aa    MW: 25928.9 Da    PI: 6.237
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12792_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.21.6e-122349127
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekA 27
                 kprlrWt +LH+rFv+av++LGG+++ 
  RrC12792_p1 23 KPRLRWTADLHDRFVDAVAKLGGADRS 49
                 79**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-112049IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-82348IPR006447Myb domain, plants
PfamPF143792.0E-1980125IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MERVNLGGLG YENGGVMMTR DPKPRLRWTA DLHDRFVDAV AKLGGADRSS YVHFDNCSQG  60
GISNESRFDN HLRQSGNVPF ADTLRHQVDA QQRFQEQLEV QRKLQMRMEA QGKYLLTLLE  120
KAQKSMPCGG NGGETDKGQF SDFSLALSGL VGDHDHKNDK TGLVTNILHV DGDLTEDFQL  180
CGERKKGENG DEGVKPESGF VHFDLNSKGG YDLLNSGKYG IEMKPNMIAD RHQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895371e-148AC189537.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH003E13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480474.11e-158PREDICTED: myb family transcription factor PHL11
SwissprotC0SVS41e-132PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A397Z6C11e-145A0A397Z6C1_BRACM; Uncharacterized protein
TrEMBLM4E8G51e-145M4E8G5_BRARP; Uncharacterized protein
STRINGBra025071.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124952530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-123G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]