PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC12807_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 269aa MW: 31614 Da PI: 9.1597

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC12807_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	72.7	6.9e-23	59	150	6	97
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +w+ +D +++L+G++++++++g + +d+d fy + k+ i++ +sk+ql++ +++LK +f+ ++ + gk+ f+++ +++ f ls +iW RrC12807_p1 59 IWNINDVLLILKGIVEYENERGFRYNSDWDIFYGYTKDLINIPFSKKQLMQQVKKLKMRFEFYFQRFNVGKQLCFTNSYEKELFRLSTIIWA 150 8******************************************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.4E-17	59	149	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MVNSSDSFLE SQQKHKSLPS SSSSSSSSSL KSKHEDDDED VSYTETMVRR RRQQKKYLIW 60 NINDVLLILK GIVEYENERG FRYNSDWDIF YGYTKDLINI PFSKKQLMQQ VKKLKMRFEF 120 YFQRFNVGKQ LCFTNSYEKE LFRLSTIIWA KNETEDAFSE NRQDQAKVLV LNKGVPLVDQ 180 KRVIDTRKDK DVSQDLGGMD EFYVLQDALE AVTSFQSLGK TQQKMLFQNL KTLGAQRRKE 240 LAGEWKALLN EEMELHIKKL TFFGKLPCE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443703.1	1e-165	PREDICTED: GLABROUS1 enhancer-binding protein-like 3
TrEMBL	A0A0D3D5U0	1e-136	A0A0D3D5U0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EZD7	1e-136	A0A3P6EZD7_BRAOL; Uncharacterized protein
STRING	Bo7g043690.1	1e-137	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	5e-24	DNA-binding storekeeper protein-related transcriptional regulator