PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1282_p10
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 120aa    MW: 13410 Da    PI: 5.5089
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1282_p10genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like543.8e-1786120136
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm 36 
                  +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm
  RrC1282_p10  86 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLM 120
                  59*******************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-883120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-1585120IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-1187120IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MREDDSDWFS RWEQDLPSPD ELIPLSQSLI SPDLALAFDI RTPSQPPHHH QSSTPFTPSQ  60
ANSSAEFAAD SSDLAAGDEP ARTLKRPRLV WTPQLHKRFV DAVAHLGIKN AVPKTIMQLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-1986120135Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486345.14e-81PREDICTED: transcription factor PCL1
SwissprotO222101e-37MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0D3CLC98e-70A0A0D3CLC9_BRAOL; Uncharacterized protein
STRINGBo5g137150.11e-70(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.13e-53G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]