PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12946_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 316aa    MW: 34779.3 Da    PI: 9.5619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12946_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.9e-07108127626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C+f+ + G Ck Gd C+F H+
  RrC12946_p1 108 CKFWKA-GNCKKGDHCSFLHS 127
                  ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.101.2E-2962100IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:4.10.1000.104.4E-6101127IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5102128IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.8E-29105315IPR017986WD40-repeat-containing domain
PROSITE profilePS5010313.497107129IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4108127IPR000571Zinc finger, CCCH-type
SMARTSM003201.7E-4133172IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.2E-29133315IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008213.917140181IPR001680WD40 repeat
PROSITE profilePS5029415.373140316IPR017986WD40-repeat-containing domain
PfamPF117154.1E-6155189No hitNo description
PRINTSPR003205.9E-6159173IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
SMARTSM0032075212249IPR001680WD40 repeat
PRINTSPR003205.9E-6236250IPR020472G-protein beta WD-40 repeat
SMARTSM003207.2E-4257295IPR001680WD40 repeat
PfamPF004003.2E-5260295IPR001680WD40 repeat
PROSITE profilePS5008210.475279304IPR001680WD40 repeat
PRINTSPR003205.9E-6282296IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780282296IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSYYKAPRRY SKERNFGVER QQGFASDIVP RRPYDNRMNI KGPNKWSRSL VWTASDGNMP  60
RKNDSTYALS SYQQRKDAAY GQRSSYASYV KGWGSSDKGS PKSKDCVCKF WKAGNCKKGD  120
HCSFLHSWTS LPGMVMVAAL EGHKKGLKGI ALPQGSDKLF SASSDGTLRI WDCHTGQCVH  180
TINLQAEAGS LMSEGPWVFL GLPNAVKAFN VQTSKDLHLN GVVGQVRAMT VGNGMLFAGT  240
SSGSISVWKA TDTESDPFTY LTSLEGHHSG EVTCFIVGGQ RLYSGSVDKT IKVWDLNTLE  300
CTMTLRQHTD TVTSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-1213931510301Tako8
6g6n_A1e-1213931510301Tako8
6g6n_B1e-1213931510301Tako8
6g6n_C1e-1213931510301Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479748.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like, partial
SwissprotQ9FKR91e-159C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3P6C1Y00.0A0A3P6C1Y0_BRACM; Uncharacterized protein (Fragment)
STRINGBo4g140040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.11e-156C3H family protein