PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1296_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 318aa    MW: 36560.7 Da    PI: 9.3565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1296_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.96.5e-3135123187
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f kvltpsdv+k++rlv+pk++ae++   + + ++++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F++ + 
  RrC1296_p3  35 FYKVLTPSDVGKLNRLVIPKQHAENYfplEDN-QTGTVLDFEDRTGKTWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDRGDTVSFHRGHV 123
                 789********************999**7544.46779***********************************************96554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-3830121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-3032121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-2633120No hitNo description
SMARTSM010192.2E-2235139IPR003340B3 DNA binding domain
PROSITE profilePS5086314.57935139IPR003340B3 DNA binding domain
PfamPF023625.9E-2835126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNTSTRTSSV QEPTENGASG SNNNNFNSAM KEHMFYKVLT PSDVGKLNRL VIPKQHAENY  60
FPLEDNQTGT VLDFEDRTGK TWRFRYSYWN SSQSYVMTKG WSRFVKEKKL DRGDTVSFHR  120
GHVPGENEPE KRINILYIDW RHRANRNLVH NINYHHYPLL GSSPYPTASY YPHYRRFPPF  180
YQEREFLGHG YGRIVHGPLD HHLHQWNLGR SEPLVYDSYP VFPTMRFTSS SAMLPPSLPS  240
QPPTVKKVRL FGVDVEESSF SGGEMSVAGY SPSSPVVIRD DESTWRSSRG QMGASSSSSV  300
MQLTCDEEYQ RKGKSVEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-49291432113B3 domain-containing transcription factor NGA1
5os9_B4e-49291432113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475147.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_018475148.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-141NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A3P6AVI81e-147A0A3P6AVI8_BRACM; Uncharacterized protein
STRINGBostr.7365s0004.1.p1e-151(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-116B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]