PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1301_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 425aa    MW: 48945.3 Da    PI: 5.6037
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1301_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.56.6e-3341352128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  pGf+F+P deelv +yL++k+ g+   ++ vike++i++++PwdL+  +k+k+++  wyf s+r+++   g+r++r t sg+Wk tg   +v ++   
  RrC1301_p3   4 KPGFEFRPYDEELVGYYLRHKILGNYSLVDGVIKEIKICSFDPWDLRfqSKIKSRDLVWYFLSRREEN--VGSRQSRRTPSGFWKLTGDPVDVNDRwgh 100
                 59************************999899**************8423777777799999988776..589**********************9776 PP

         NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++g k++L+f kg++++ +k+dWvmhe + 
  RrC1301_p3 101 lsgFRGKIGYKRVLTFGKGKSSS-SKSDWVMHELHY 135
                 6664456**********998887.8********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.5463153IPR003441NAC domain
SuperFamilySSF1019411.57E-334153IPR003441NAC domain
PfamPF023653.7E-195134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGEKPGFEFR PYDEELVGYY LRHKILGNYS LVDGVIKEIK ICSFDPWDLR FQSKIKSRDL  60
VWYFLSRREE NVGSRQSRRT PSGFWKLTGD PVDVNDRWGH LSGFRGKIGY KRVLTFGKGK  120
SSSSKSDWVM HELHYTLLPE HKRTYVICRL EYKGDDMNIL SANPTYPIPT FAPTMANSAS  180
SVVDQSSNGN SGYYNTLSEY DSAYQGHQFN GNYDAQPSFQ GYTEYLNSTS EYDLANGSHW  240
FSNLQQQAPY SAPYQDDSDL WKQVVEENWT SLVDERTYMR EDSSHYRPKD PVTGIFPDDS  300
SDDDTDSTIG RDTWSSTDSV GSKDVPYHTP KDDTPSLSTV EPLHNHEAQE QPKHLELQLQ  360
GKEKKSECEW KMAEDSTKKV PSTTAVKQSW IVLEEMSQRN SRWIHLKNMI IGFLLFLSII  420
GWIIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-16513217137Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073236e-36AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965666e-36AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026846e-36CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437290.10.0PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV961e-165NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A0D3C7170.0A0A0D3C717_BRAOL; Uncharacterized protein
STRINGBo5g002860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-147NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]