PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1301_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 376aa MW: 43186.4 Da PI: 6.4192

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1301_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.5	2.3e-35	5	124	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 +GfrF Ptdee+v++yL+ k g + +++++i++vdi+++ePw+Lp k k +++++ wy+F ++++ +g+r+nr+tksg+Wk+tg ++++++k + RrC1301_p5 5 VGFRFIPTDEEIVDYYLRLKNLGGDtSHVDKAISTVDICSFEPWELPsKsKRESRDQMWYYFGRKEN---RGERQNRKTKSGFWKKTGVTTNIMRKrgN 100 7***************99877773666677************4334455777999998766...689********************9877 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 +e++g k++Lvf +k++Wvmhey RrC1301_p5 101 REKIGEKRVLVFQ-------SKSEWVMHEYV 124 888*****8.......5899****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.81	3	143	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-37	4	143	IPR003441	NAC domain
Pfam	PF02365	8.7E-22	5	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MENRVGFRFI PTDEEIVDYY LRLKNLGGDT SHVDKAISTV DICSFEPWEL PSKSKRESRD 60 QMWYYFGRKE NRGERQNRKT KSGFWKKTGV TTNIMRKRGN REKIGEKRVL VFQSKSEWVM 120 HEYVATFLPP TQTTYTVCKV IFKGDPRDLP SSAPGGGAVI EKLTTTSFNP RHFTGLLDAE 180 EETQIDDALR RAFDNVSTHD LNSLLNNENS DEEEEHRNLL FMQEDRNDYR PKMSLTGFIS 240 DDDSDSDLIS ATTTTTTTTT FPPHNANVLF TMIVFHPNLE PFSNRRIDQI TDLQNAPNST 300 TKLMSPTQVV SKTLETSLDT SEKKKNLYED VQGTEMGESE MDQYIINNKR AGFYYRKIQS 360 CIKKTLLCSS IPPRTG

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MENRVGFRFI PTDEEIVDYY LRLKNLGGDT SHVDKAISTV DICSFEPWEL PSKSKRESRD  60
QMWYYFGRKE NRGERQNRKT KSGFWKKTGV TTNIMRKRGN REKIGEKRVL VFQSKSEWVM  120
HEYVATFLPP TQTTYTVCKV IFKGDPRDLP SSAPGGGAVI EKLTTTSFNP RHFTGLLDAE  180
EETQIDDALR RAFDNVSTHD LNSLLNNENS DEEEEHRNLL FMQEDRNDYR PKMSLTGFIS  240
DDDSDSDLIS ATTTTTTTTT FPPHNANVLF TMIVFHPNLE PFSNRRIDQI TDLQNAPNST  300
TKLMSPTQVV SKTLETSLDT SEKKKNLYED VQGTEMGESE MDQYIINNKR AGFYYRKIQS  360
CIKKTLLCSS IPPRTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-18	6	123	20	140	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-18	6	123	20	140	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-18	6	123	20	140	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-18	6	123	20	140	NO APICAL MERISTEM PROTEIN
3swm_A	1e-18	6	123	23	143	NAC domain-containing protein 19
3swm_B	1e-18	6	123	23	143	NAC domain-containing protein 19
3swm_C	1e-18	6	123	23	143	NAC domain-containing protein 19
3swm_D	1e-18	6	123	23	143	NAC domain-containing protein 19
3swp_A	1e-18	6	123	23	143	NAC domain-containing protein 19
3swp_B	1e-18	6	123	23	143	NAC domain-containing protein 19
3swp_C	1e-18	6	123	23	143	NAC domain-containing protein 19
3swp_D	1e-18	6	123	23	143	NAC domain-containing protein 19
4dul_A	1e-18	6	123	20	140	NAC domain-containing protein 19
4dul_B	1e-18	6	123	20	140	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00123	DAP	Transfer from AT1G02250	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492222.1	0.0	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81914	1e-105	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWW3	1e-179	M4EWW3_BRARP; Uncharacterized protein
STRING	Bra033298.1-P	1e-180	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-92	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]