PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1302_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 182aa    MW: 20420.3 Da    PI: 9.4233
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1302_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.64e-30358458
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                 + Y+eClkN+A+s Gg+a+DGCgEfmp++++  +++ +l C ACgCHRnFHRr+++
   RrC1302_p6  3 FLYNECLKNQAVSFGGYALDGCGEFMPKSTTIlTDPPSLSCDACGCHRNFHRRDHS 58
                 68**************************99999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-24168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.3E-25457IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.816556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-29556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-21103165IPR009057Homeodomain-like
SuperFamilySSF466899.56E-13105165IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-26108165IPR006455Homeodomain, ZF-HD class
PROSITE patternPS003650135151IPR006066Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0020037Molecular Functionheme binding
GO:0051536Molecular Functioniron-sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVFLYNECLK NQAVSFGGYA LDGCGEFMPK STTILTDPPS LSCDACGCHR NFHRRDHSNV  60
VSHCTTSPLQ PAASTQHLLL SLSSSGFSAG PSDQDKGKIM VDRELVTKRR KRTKFTVKQK  120
VMMRGFAERA GWKINGCDDE CVRKFCSDVG VEREALKVWI HNNKYFANGR NRNTTSSMFQ  180
KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-171081651774ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114837e-46AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9.
GenBankCP0026887e-46CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473087.11e-136PREDICTED: zinc-finger homeodomain protein 12
SwissprotQ9FKJ93e-84ZHD12_ARATH; Zinc-finger homeodomain protein 12
TrEMBLA0A397ZUP01e-106A0A397ZUP0_BRACM; Uncharacterized protein
TrEMBLM4CR161e-106M4CR16_BRARP; Uncharacterized protein
STRINGBra006657.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.13e-71homeobox protein 26