PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1307_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 333aa    MW: 37387.5 Da    PI: 7.2389
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1307_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731222.9e-38122211297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 +f+rlw+eeDei++LqG+idfk++tg sp+dd++a y+++kksisf+vsk+q+++K+r+LKkK+ +k kk      +sf+k+h++k++ l+k iWg
  RrC1307_p4 122 AFHRLWTEEDEIAVLQGMIDFKKDTGNSPYDDTNAYYDYIKKSISFEVSKNQFMDKLRSLKKKYMGKDKK------TSFTKPHEHKSYRLCKYIWG 211
                 599****************************************************************999......9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-30123211IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTKKHNPLEN PPAASSSDDE EELDSSAGEE EEVNDSSSSS EDEEEDQPKP PSSSAVTISI  60
PAKTSDSHSG SETETDSESD IAGKSKKPPP PPTNKSGTKR PSEVTSKETN SKRTKKEKQP  120
GAFHRLWTEE DEIAVLQGMI DFKKDTGNSP YDDTNAYYDY IKKSISFEVS KNQFMDKLRS  180
LKKKYMGKDK KTSFTKPHEH KSYRLCKYIW GPDGMGLESA VKSNGASSKK KTKKVDDGSV  240
KKELSFASSP PNGGEERFDW FEKSFLVRGI AGFGVDESYV RQRWRLVPVE TRKKVEEKVK  300
MLQAKEIEFV LHKTEILRDV TSMIAEASRN RSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280293RQRWRLVPVETRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434903.10.0PREDICTED: probable transcription factor At1g61730
SwissprotQ9SYA91e-103STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A3P6C3X01e-157A0A3P6C3X0_BRAOL; Uncharacterized protein
STRINGBo4g087160.11e-156(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.18e-83DNA-binding storekeeper protein-related transcriptional regulator