PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC130_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 278aa MW: 31954.2 Da PI: 7.1003

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC130_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.3	4.1e-11	31	106	12	90
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++ ++p +f+++ +g + l++ ++g+sW+v l ++ ++ ++ ++ W eFv++n L+ D+++F++++++ + RrC130_p3 31 SKSTRIIPEEFVRRTNGA--FEHRLVFSVSWGNSWQVWL--QRDENGlFMEEEDWDEFVDDNLLDPSDILIFTHVDTMFT 106 456679****999766..4447***********..88888879999*******************9876554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.8E-12	15	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.65E-13	16	113	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.47E-10	17	103	No hit	No description
SMART	SM01019	1.3E-11	19	114	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.884	20	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.4E-9	31	103	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.94E-6	176	272	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-5	177	269	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.002	183	274	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MTLNSAFDLL QENASKPRFC KSLSLGENWK SKSTRIIPEE FVRRTNGAFE HRLVFSVSWG 60 NSWQVWLQRD ENGLFMEEED WDEFVDDNLL DPSDILIFTH VDTMFTEARI YKKDSRFFKQ 120 VISSPLLAAE VLSPNPQTSR QETPSSAPPG FASASASASR ARQSCSPVQN PEQYLLNPQN 180 PYFVKTLSKK IDVLYVNQDV IQKYGLKFGP HLSPIHYLLP REKHEAVLKI YRNNTPCFNR 240 WAAICKKYEK KEGDSVVCEL ERDTLGVVTA VRVHFVNE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189520	3e-86	AC189520.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091J13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437705.1	0.0	PREDICTED: B3 domain-containing protein At5g25470-like
Swissprot	Q1PDT6	1e-99	Y5547_ARATH; B3 domain-containing protein At5g25470
TrEMBL	A0A3P6AUT4	1e-161	A0A3P6AUT4_BRACM; Uncharacterized protein
STRING	Bra020501.1-P	1e-155	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4491	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25470.2	4e-98	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]