PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13190_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 69aa MW: 8198.34 Da PI: 9.0667

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13190_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.3e-09	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 r +W++eE++ l+ ++ ++G+g W+ I + R+ ++k++w++ RrC13190_p1 5 RRKWSAEEEDALLAGICKYGPGKWSYIINDPEfraqlSYRSNIDLKDKWRNM 56 789************************9999999999********995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.017	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-15	4	58	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-4	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-14	5	56	IPR009057	Homeodomain-like
CDD	cd11660	1.18E-17	6	57	No hit	No description
Pfam	PF13921	5.5E-5	8	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MYAQRRKWSA EEEDALLAGI CKYGPGKWSY IINDPEFRAQ LSYRSNIDLK DKWRNMTIKE 60 ESKTLVNQI

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001077814.1	7e-23	Homeodomain-like/winged-helix DNA-binding family protein
Refseq	NP_177418.2	8e-23	Homeodomain-like/winged-helix DNA-binding family protein
Swissprot	F4IEY4	7e-24	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A078FEV3	9e-41	A0A078FEV3_BRANA; BnaC03g70060D protein
TrEMBL	A0A0D3BN24	9e-41	A0A0D3BN24_BRAOL; Uncharacterized protein
TrEMBL	A0A397Y6S3	8e-41	A0A397Y6S3_BRACM; Uncharacterized protein
TrEMBL	A0A3P6B8J7	9e-41	A0A3P6B8J7_BRAOL; Uncharacterized protein
TrEMBL	M4EQ23	8e-41	M4EQ23_BRARP; Uncharacterized protein
STRING	Bra030894.1-P	1e-41	(Brassica rapa)
STRING	Bo3g184590.1	1e-41	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16580	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	2e-26	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]