PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC131_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 399aa    MW: 44122.5 Da    PI: 4.4016
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC131_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS230.86.4e-711253952277
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++s  +  + l+++++     ++++ a+k fs +sPi+ fsh+taNq
  RrC131_p7 125 IEDLIRVVDCVESDELQLAQVILSRLNQRlRSPTGRPLQRAAFYFKEALGSLLTGSNRNQNRLLSSWTE----IVQKIRAVKEFSGISPIPLFSHFTANQ 220
                678*************************99*************************55555544444444....8************************** PP

       GRAS 101 aIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                aIl++++++      vH++Dfdi+ G+Q+++L++++a+++ ++  lR+T+v+++e   + e++ ++e+L++fA+e++++f++++++ak++e+l+++++r+
  RrC131_p7 221 AILDSLSSQqsssPFVHVVDFDIGFGGQYASLMREIAEKSISSGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQIEFVLAKTFEMLSFKAIRF 318
                ******9986666789*************************************66..9****************************************** PP

       GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpr 277
                  gE ++V ++ +++r l       s + ++++ ++++sPkvvv+v+ e  ++  +++sF ++f+ ale+y+++++sl+a +p+
  RrC131_p7 319 VDGERTVVLISPAIFRRL-------SGIGDFVNNLRRVSPKVVVFVDGEgwTEIaGAGSFRREFVTALEFYTMVLESLDAAAPP 395
                *****************9.......44567*******************766668999********************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.27198399IPR005202Transcription factor GRAS
PfamPF035142.2E-68125395IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MKVQASSPQD NQPSNTTNNT NSTDNTNNQL PSMDEHVMRS MDWDSIMKEL ELDDDSTPNP  60
LKTEFTTTES AIGPLYAVDS NLPGFPDQIQ PSDFDSSDPY PGQNQTTGYA FNSLDSVDNG  120
GFDFIEDLIR VVDCVESDEL QLAQVILSRL NQRLRSPTGR PLQRAAFYFK EALGSLLTGS  180
NRNQNRLLSS WTEIVQKIRA VKEFSGISPI PLFSHFTANQ AILDSLSSQQ SSSPFVHVVD  240
FDIGFGGQYA SLMREIAEKS ISSGFLRVTA VVAEECAVET RLVKENLTQF AAEMKIRFQI  300
EFVLAKTFEM LSFKAIRFVD GERTVVLISP AIFRRLSGIG DFVNNLRRVS PKVVVFVDGE  360
GWTEIAGAGS FRREFVTALE FYTMVLESLD AAAPPGGSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2013039225280Protein SCARECROW
5b3h_A2e-2013039224279Protein SCARECROW
5b3h_D2e-2013039224279Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470388.10.0PREDICTED: scarecrow-like protein 15
RefseqXP_018471096.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A3P5Z1490.0A0A3P5Z149_BRACM; Uncharacterized protein
TrEMBLM4D5E30.0M4D5E3_BRARP; Uncharacterized protein
STRINGBra011700.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]