PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC131_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 260aa    MW: 29613.2 Da    PI: 7.2176
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC131_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS65.88.6e-21262314374
       GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +Wre++  aG+++++ls++a+ qa++ll+k +++g++v +++++lvl+W++r+Lv++SaWr
  RrC131_p8   2 TWREAFCGAGMRSIQLSQFAVFQAECLLEKAQVRGFHVAKRQEELVLCWHGRALVATSAWR 62 
                7***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.823142IPR005202Transcription factor GRAS
PfamPF035143.0E-18262IPR005202Transcription factor GRAS
PfamPF031341.2E-2396177IPR004345TB2/DP1/HVA22-related protein
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTWREAFCGA GMRSIQLSQF AVFQAECLLE KAQVRGFHVA KRQEELVLCW HGRALVATSA  60
WRLDYVYCSL HLVPISYFVP HGEILILICS IGIGLPVYST FKAIENRDQS AQRKWLIYWA  120
AYGSFSLVEV FTDKLISWFP LYYHAKFAFL VWLQLPTIDV LLLQGAKQIY NNRLRPFLIR  180
HQVRVDRLVD GVYGEMVKVV RTHQGGVRVV RLIIVKIFGS GNEAAPPSQG QGETPNISPE  240
QEPSTATIQD LEESESDHDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470391.11e-118PREDICTED: HVA22-like protein k isoform X2
RefseqXP_018471100.11e-118PREDICTED: HVA22-like protein k isoform X2
SwissprotQ6NLY81e-77HA22K_ARATH; HVA22-like protein k
TrEMBLA0A3P5Z1491e-148A0A3P5Z149_BRACM; Uncharacterized protein
TrEMBLM4D5E31e-148M4D5E3_BRARP; Uncharacterized protein
STRINGBra011700.1-P1e-149(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.12e-34GRAS family protein