PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13371_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 452aa    MW: 49687.7 Da    PI: 4.2215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13371_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.84.3e-111350239
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                 +ie k  ++v fskRr g+  KA+ L+vL  a+va++ 
  RrC13371_p1 13 KIEKKESKSVAFSKRRRGLYSKASQLCVLSRAQVAILA 50
                 79*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-5163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.811449IPR002100Transcription factor, MADS-box
CDDcd002661.63E-19580No hitNo description
SuperFamilySSF554559.94E-131181IPR002100Transcription factor, MADS-box
PfamPF003192.3E-111354IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGGLKRKIPT DEKIEKKESK SVAFSKRRRG LYSKASQLCV LSRAQVAILA TPPCSKSNVS  60
FFSFGHSSVD SVVSAFLKNQ YPREDHLGSE FWWEDERLAE SEDPEELIEA VDSISRMMQN  120
LKGLRSKALA NREDAKKKKK EVVRDQSQTL NLQSTCASSS CIHEDPPENL PGLVKKIKEE  180
DQKVAVSDKN NNNKELDGNQ TLGFQSSFAS ICIQDVSPEN VEGVVNSSEQ KDQIVVSSDS  240
VNNNGLLGNL DGFDQVLSLD DDFIDFQGLV ENCKEEDHLV DENKNVIKHG THQDLDGNQT  300
TGFQSSAASL CTQDVSPESL EGSEHKDQIL ASSDSNNGLL GNMDGFNQVL SFADDDFIDF  360
EMDSEGLITT NFDMSVASTN GYSCTGSGSE DGAMMVIPSD SVKDNQMVAV SDSNNALPRN  420
LYGCNQEFDI DQIFDFVKST EDLSLNYIDV TP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443272.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLM4CYY91e-138M4CYY9_BRARP; Uncharacterized protein
STRINGBra009436.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.14e-54AGAMOUS-like 99