PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13382_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 337aa MW: 37279.3 Da PI: 6.2363

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13382_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	7e-10	148	197	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + RrC13382_p1 148 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLFQR 197 9****************************************998876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.3E-16	144	208	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	146	209	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.3E-10	148	202	No hit	No description
Pfam	PF00170	3.4E-8	148	196	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.83E-10	148	199	No hit	No description
CDD	cd14703	1.49E-22	149	198	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MDKSDPQQPK PTTDPHPNPN ADPTPSSFHR RSRSDDMSMF MFMDPLSSAG PPPSSDDLPS 60 DDDLFSSFID VDSLSSNPHP AIAFPNHHAS NSNSVVVSGA VPSSSSRPRH RHSNSVDAGC 120 AMYANEIMDA KKAMPPEKLS ELWNIDPKRA KRILANRQSA ARSKERKARY IQELERKVQS 180 LQTEATTLSA QLTLFQRDTN GLANENTELK MRLQAMEQQA HLRNALNEAL RKELERMKIE 240 TGEISGNSDS FDMGMQQVQY SPSTFMAIPP YHHGQDMQQM HGFNPSHPME AMSNSQSVSE 300 FLQNGRMQGL EISSNNSSSL VKSEGPSLSA SESSSAY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00129	DAP	Transfer from AT1G06850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018432665.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	2e-81	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A397YQV1	1e-178	A0A397YQV1_BRACM; Uncharacterized protein
STRING	Bra031541.1-P	1e-173	(Brassica rapa)
STRING	Bo8g114410.1	1e-172	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13555	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	1e-123	basic leucine-zipper 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]