PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1346_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 172aa MW: 18692.1 Da PI: 7.7891

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1346_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.3	1.5e-44	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+dCv++pyfpa++p+kfanvh++FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ +lal+++ RrC1346_p3 13 PCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQGQLALAQA 111 7**********************************************************************************************9997 PP DUF260 100 e 100 e RrC1346_p3 112 E 112 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.096	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE 60 LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID VLQGQLALAQ AEVVHLRVRH 120 STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGIFSHMDMV DEASLGESMW SC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-50	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	8e-50	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473839	1e-173	AB473839.1 Arabidopsis thaliana ASL6 mRNA for ASYMMETRIC LEAVES2-like 6 protein, complete cds.
GenBank	BT015067	1e-173	BT015067.1 Arabidopsis thaliana At1g31320 gene, complete cds.
GenBank	BT015665	1e-173	BT015665.1 Arabidopsis thaliana At1g31320 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486923.1	1e-126	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	1e-106	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A078INQ1	1e-124	A0A078INQ1_BRANA; BnaCnng19520D protein
TrEMBL	A0A0D3D5L9	1e-124	A0A0D3D5L9_BRAOL; Uncharacterized protein
TrEMBL	A0A291LQV0	1e-124	A0A291LQV0_BRARR; Transcription factor LBD4
TrEMBL	A0A397YJZ4	1e-124	A0A397YJZ4_BRACM; Uncharacterized protein
TrEMBL	A0A3P6EJ49	1e-124	A0A3P6EJ49_BRAOL; Uncharacterized protein
TrEMBL	M4DEI6	1e-124	M4DEI6_BRARP; Uncharacterized protein
STRING	Bra014907.1-P	1e-124	(Brassica rapa)
STRING	Bo7g041000.1	1e-124	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-103	LOB domain-containing protein 4