PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC134_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family YABBY
Protein Properties Length: 188aa    MW: 21132.9 Da    PI: 9.6704
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC134_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2504.4e-7721642170
      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                +++ ss++vCyv+CnfC+tilav+vP++slf++vtvrCGhCt+lls+n+ ++ ++++ +          ++++ ++++++++s v+++e  s+s+ss+++
  RrC134_p2   2 SIDLSSDHVCYVHCNFCTTILAVNVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSPTP---------IHQDPQQHKQHITSAVTRKEYGSSSRSSNHF 92 
                67789*********************************************9999887766.........6777777777777777777666666666665 PP

      YABBY 102 ....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     e+ d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  RrC134_p2  93 sttlVESVDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPHIHFGL 164
                3333788999****999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.4E-726164IPR006780YABBY protein
SuperFamilySSF470959.69E-8109157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.3E-4112158IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSIDLSSDHV CYVHCNFCTT ILAVNVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQTSPT  60
PIHQDPQQHK QHITSAVTRK EYGSSSRSSN HFSTTLVESV DREAPRMPPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKAGNPE ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA  180
GQKSNGYY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533260.0AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450150.11e-141PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB01e-118YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A1J3F0Q61e-128A0A1J3F0Q6_NOCCA; Putative axial regulator YABBY 2
STRINGBo5g009010.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-117YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]