PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1360_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 188aa    MW: 21396.2 Da    PI: 5.5842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1360_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-09105145954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L+ l+P       +K++ a++L +A++YIk L
  RrC1360_p3 105 ARHRRERISERIRILQILVPGG-----TKMDTASMLDEAIRYIKFL 145
                 599*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.79996145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-13102154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-11104152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6106145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-6119150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNNKSDHHHH NDPIGMAAMD QHPQLRIFNP FTSSHLPPLS SSLSATTFFS EDQEEEEEPV  60
EELSAMKEMM YKVAAMQPVD IDPETVKIPK RRNVRISDDP QTVAARHRRE RISERIRILQ  120
ILVPGGTKMD TASMLDEAIR YIKFLKRQIR LLDNPPPPQD QDSQAMTTSW VSELPPPDFG  180
SGAGGRDW
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443360.11e-104PREDICTED: transcription factor HEC3-like
SwissprotQ9LXD82e-69HEC3_ARATH; Transcription factor HEC3
TrEMBLA0A078G9C42e-87A0A078G9C4_BRANA; BnaC09g46950D protein
STRINGBra028620.1-P2e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]