PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13650_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 198aa MW: 21930.5 Da PI: 6.962

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13650_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.6	1.3e-17	51	100	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g RrC13650_p1 51 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTAEKAARAHDVAALAIKG 100 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.68E-34	50	110	No hit	No description
Pfam	PF00847	1.2E-11	50	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-32	51	109	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.985	51	108	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.77E-21	51	109	IPR016177	DNA-binding domain
SMART	SM00380	1.8E-39	51	114	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-10	52	63	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-10	74	90	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MDHSSSSESH LDDCRSFQDS PAPERTVNSN NPKKKRVKKD NDEKAVSKHP SFRGVRMRQW 60 GKWVSEIREP RKKSRIWLGT FSTAEKAARA HDVAALAIKG RSAHLNFPEL AYHFPRPASV 120 NPKDIQAAAA AAAAVAIDLE VETSLPSPAS TEHSYPAMTA TADDAFTDLP DLLLDVNHKL 180 DGFWDCLPSE EPFFTGSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-18	47	108	10	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	38	PKKKRVKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00292	DAP	Transfer from AT2G35700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480751.1	1e-134	PREDICTED: ethylene-responsive transcription factor ERF038
Swissprot	Q9ZQP3	2e-83	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	A0A0D3C4D7	1e-114	A0A0D3C4D7_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6S1H8	1e-114	A0A3N6S1H8_BRACR; Uncharacterized protein
STRING	Bo4g184540.1	1e-114	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	2e-69	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]