PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1373_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 321aa    MW: 36920.4 Da    PI: 5.0141
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1373_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.1e-191096195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                ffkv+   ++++s+ + +p ++ +e   + + +kt +l+ + g +W+v++  ++k++++++ kGW++Fv +n L +gDf++F ++g++ fe   +
  RrC1373_p1 10 FFKVF--ISHHSSDSMLIPISYNDEL--PRTLPKTAILQGTGGCVWKVEM--KRKRDEVYFVKGWNKFVTDNSLTDGDFLTFVYNGDNVFEV--S 96
                89999..666777779*****98665..567999****************..*********************************9999954..4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-223100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-244103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.1288101IPR003340B3 DNA binding domain
CDDcd100174.20E-18898No hitNo description
SMARTSM010194.9E-1810101IPR003340B3 DNA binding domain
PfamPF023628.9E-171095IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-5228308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-6231315IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAADDTPPRF FKVFISHHSS DSMLIPISYN DELPRTLPKT AILQGTGGCV WKVEMKRKRD  60
EVYFVKGWNK FVTDNSLTDG DFLTFVYNGD NVFEVSIYGL GGCKEIRAVT EVEDVTEDSV  120
VSLSSNDTDT TSSESDMANT INKNKGKSQV VGVEDESEDE EDSDYKEESD YEDSDSDYTE  180
ASDHLYEFNE SSKSVALPKK KRERVTVKKI KDPEKYLVDP NNVFFETSVK NRPYELLVHG  240
QLVKDYDLKF EKMVYYIDHH KDGKLQAKVT QWTDHRVFIT KWNLICKRNK LKKGDGILCE  300
LKRRQGVVYA VIIHIVREND L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-1931034104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480357.10.0PREDICTED: B3 domain-containing protein At4g34400-like isoform X1
SwissprotQ9M8K21e-89REM21_ARATH; B3 domain-containing protein REM21
TrEMBLA0A0D3DHN61e-170A0A0D3DHN6_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RTJ21e-170A0A3N6RTJ2_BRACR; Uncharacterized protein
STRINGBo7g116840.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.18e-43B3 family protein