PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1376_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 367aa    MW: 40312.5 Da    PI: 7.1189
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1376_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.19.6e-2699181271
     E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 ++++Lr+++ k   ++ek+e+  ++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  RrC1376_p4  99 TGRGLRQFSLK---VCEKVESkVRTTYNEVADELVAEfalpnndgtppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 181
                 689********...*****99899*****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.2E-1303367IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.5E-4494187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.3E-3398181IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.8E-24101181IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.4E-20101182IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.25E-42186289IPR014889Transcription factor DP, C-terminal
SMARTSM011383.0E-63188338IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440749.42E-42188316No hitNo description
PfamPF087813.4E-43189316IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MATTTPTGSN SNHNSNNNPS TTRSSWGTGA QSVSTSGSVG SPSTTTTTLA TTTTTTDSAF  60
LQLNNLDIQG DDAASQLPSS SSCGKKKKRG QRASGPDKTG RGLRQFSLKV CEKVESKVRT  120
TYNEVADELV AEFALPNNDG TPPDQQQYDE KNIRRRVYDA LNVLMAMDII SKDKKEIQWR  180
GLPRTSLSDI EELKAERLSL RNRIEKKTAY SQELEEQYVG LQNLIRRNEH LYSSGNAPTG  240
GVALPFILVQ TRPHATVEVE ISEDMQLVHF DFNSTPFELH DDNFVLKTMK FCDQTPPLNN  300
GHSNNQQKAS HSSVPENNNQ GPSTSYPTPH MHQSHPQPPQ HQLPVTNNAS APVTSPGIIK  360
SSVKPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3092186193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472185.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D3AHL90.0A0A0D3AHL9_BRAOL; Uncharacterized protein
STRINGBostr.2128s0112.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-167Transcription factor DP