PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13838_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 174aa MW: 19581.9 Da PI: 6.4051

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13838_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.6	8.6e-10	3	41	12	50
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 tfskR++ ilKK +E+ +L ++e++ ++f + gk + ++ RrC13838_p1 3 TFSKRKARILKKMNEITTLFNVEASFLVFPEAGKPHSFA 41 9********************************998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.428	1	44	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0019	1	43	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-11	1	40	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.03E-13	2	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MATFSKRKAR ILKKMNEITT LFNVEASFLV FPEAGKPHSF AHPSMEDSFG RVKRSLGHEP 60 SGKDDTNIGS LMEDYKKQHN EEIKKKWYDL AEELMMAEEK EKELQESKSE WSNIVNEGVS 120 VDELKRAHQA FVELNKRVSA RALQWSVKDG DGSSSALGEH GHCNGGEARA GEQT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013704711.1	2e-73	agamous-like MADS-box protein AGL23
Refseq	XP_018460891.1	3e-74	PREDICTED: agamous-like MADS-box protein AGL23, partial
TrEMBL	A0A3P6DMJ5	6e-72	A0A3P6DMJ5_BRAOL; Uncharacterized protein
STRING	Bra037759.1-P	1e-67	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	1e-23	AGAMOUS-like 57