PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13921_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 40aa    MW: 4542.17 Da    PI: 8.5178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13921_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-091037128
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                     +g+WT+eEd ll +++ ++G g W+ ++
      RrC13921_p1 10 KGAWTAEEDSLLRQCIDKYGEGKWHQVP 37
                     79**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.028540IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-11637IPR009057Homeodomain-like
SuperFamilySSF466891.08E-8738IPR009057Homeodomain-like
PfamPF002499.8E-81037IPR001005SANT/Myb domain
CDDcd001672.05E-51236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 40 aa     Download sequence    Send to blast
MEGSPKGLRK GAWTAEEDSL LRQCIDKYGE GKWHQVPLRA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
UniProtTranscription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4034518e-51KM403451.1 Brassica rapa cultivar Zi He anthocyanin R2R3-MYB transcription factor (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289193.12e-21transcription factor MYB114-like
RefseqXP_013613998.13e-21PREDICTED: transcription factor MYB114-like
RefseqXP_013716215.12e-21transcription factor MYB114-like
RefseqXP_013737797.23e-21transcription factor MYB114-like
RefseqXP_018468743.12e-21PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV81e-20MY114_ARATH; Transcription factor MYB114
SwissprotQ9ZTC33e-20MYB90_ARATH; Transcription factor MYB90
TrEMBLA0A078IZV46e-20A0A078IZV4_BRANA; BnaCnng28030D protein
TrEMBLA0A078J6566e-20A0A078J656_BRANA; BnaA02g35530D protein
TrEMBLA0A089G7N75e-20A0A089G7N7_BRACM; Anthocyanin R2R3-MYB transcription factor
TrEMBLA0A0D2ZRG66e-20A0A0D2ZRG6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AQM75e-20A0A3P6AQM7_BRACM; Uncharacterized protein
TrEMBLA0A3P6CTB86e-20A0A3P6CTB8_BRAOL; Uncharacterized protein
TrEMBLM4FF915e-20M4FF91_BRARP; Uncharacterized protein
STRINGBra039763.1-P9e-21(Brassica rapa)
STRINGBo00835s060.11e-20(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.15e-23myb domain protein 114
Publications ? help Back to Top
  1. Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
    Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
    New Phytol., 2015. 206(1): p. 422-35
    [PMID:25425527]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
    Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
    Phytochemistry, 2015. 111: p. 21-6
    [PMID:25659750]
  4. Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
    GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(11): p. e0143212
    [PMID:26588092]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Li N, et al.
    The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
    Funct. Integr. Genomics, 2018. 18(3): p. 341-353
    [PMID:29372433]