PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 191aa MW: 21131.4 Da PI: 10.2656

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.2	4.8e-15	148	189	1	42
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 ++elkre r q+NR +ArrsR+RK+a +eeL +kv++L+aeN RrC13_p4 148 QRELKREQRNQSNRKSARRSRLRKQADTEELGRKVEALTAEN 189 689**************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16596	1.5E-9	43	124	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.8E-10	148	189	No hit	No description
Pfam	PF00170	1.1E-12	148	189	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.749	150	189	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-6	152	189	No hit	No description
CDD	cd14702	1.44E-11	153	189	No hit	No description
PROSITE pattern	PS00036	0	156	170	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MWNLQPMQQF TLMEEGFTLM PESPCRGTPL NMDTPTKSTG NTENGLMKKL KESDGLAMSL 60 GNGNPPENER KRSRNSSETD GSTDGSDGNT TGADEPKLKR NEKRHLVQSS SFRSGSPTSG 120 DNGVKPVQRA IISPGVSANS NSPETWLQRE LKREQRNQSN RKSARRSRLR KQADTEELGR 180 KVEALTAENI I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	170	RRSRLRK
2	164	171	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF370307	5e-59	AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBank	ATU17891	5e-59	U17891.1 Arabidopsis thaliana G-box binding factor mRNA, complete cds.
GenBank	ATU51850	5e-59	U51850.1 Arabidopsis thaliana G-box factor 3 mRNA, complete cds.
GenBank	AY063093	5e-59	AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBank	X63896	5e-59	X63896.1 A.thaliana mRNA GBF3 for G-box binding factor 3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013725821.1	2e-79	G-box-binding factor 3-like
Refseq	XP_022553254.1	2e-79	G-box-binding factor 3-like
Swissprot	P42776	8e-69	GBF3_ARATH; G-box-binding factor 3
TrEMBL	A0A3N6QBW0	9e-81	A0A3N6QBW0_BRACR; Uncharacterized protein (Fragment)
STRING	XP_006397815.1	7e-72	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3571	26	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	7e-54	G-box binding factor 3

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]