PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1401_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 347aa    MW: 39294.8 Da    PI: 4.6858
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1401_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.92.3e-1260135279
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                 Wt +  l L++    +e++ +++ +  ++W  +s+++ +  ++r+ +qC+ kw++l  +y +i+++e++++s+s   +
  RrC1401_p2  60 WTLEDCLILVNEIAAIESDCSNALSSFQKWTMISDNCNALDVHRTFNQCRRKWDSLVSDYSQINKWEERGSSNS--YW 135
                 9999999**************************************************************96554..34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-960134No hitNo description
PROSITE profilePS500906.70260116IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
LLLPVSSSRL SDHSDLLLAL DVSSPRSSFR QKDLCDLPMM EEGTSSSGSR RTRSQVAPDW  60
TLEDCLILVN EIAAIESDCS NALSSFQKWT MISDNCNALD VHRTFNQCRR KWDSLVSDYS  120
QINKWEERGS SNSYWSLSVE KRRKLNLPGS VDNELFQAID AVVMIQENRD GSEPDSDSDP  180
DAREDFDVVD VTPELGSKRS RQRTMVVMKK ENPPQKRKTE EETQRKNNQE QSAKATHQKK  240
ALEEKKKKKK PVVEISTDEE EEEENTMSIE EEVKALEAKL GEKADLIHAI VGRNIAKGSE  300
TGDDDVGIED KLKFVRQQGD ELIACLSEIA NTLDRFREVP TSKLSDR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202KRSRQR
2243250EKKKKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449798.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A078GA251e-177A0A078GA25_BRANA; BnaA08g12610D protein
STRINGBra010246.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.19e-95sequence-specific DNA binding transcription factors