PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1406_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 245aa    MW: 27169 Da    PI: 8.2155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1406_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-1061107354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+h+e+Er+RR+riNs +++Lr +l  +      K +Ka+ L k+v+ +k+L
  RrC1406_p1  61 RNHKEAERKRRERINSHLNKLRNVLSCN-----SKTDKATLLAKVVQRVKEL 107
                 58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.40558107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1161119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-861107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1261120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.70E-1061110No hitNo description
SMARTSM003532.9E-964113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLYSFLAGKE ISGGGYCLSD DYMSTMQSLC GSPSSTSSYY PLAISGVGET VAQDRALAAL  60
RNHKEAERKR RERINSHLNK LRNVLSCNSK TDKATLLAKV VQRVKELKQQ TLEISDSDQT  120
LLPSETDEIS VLHYEDYSND GHIIFKASLC CDDRSDLLPD LMEILKSLHM KTLRADMVTL  180
GGRTRSVLVV AADKEMHGVE SVHFLQNALK SLLERSSKSL VERSSGGSGG ERSKRRRALD  240
QIIMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142723.11e-155PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-142BH106_ARATH; Transcription factor bHLH106
TrEMBLM4CK651e-154M4CK65_BRARP; Uncharacterized protein
STRINGBra004599.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-133bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]