PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14105_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 559aa    MW: 62117.4 Da    PI: 4.5423
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14105_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.7e-49131392128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  +pGfrFhPtdeelv++yLk+k+ +++l++ ++i  vd+yk++P++Lp +  +k+++++w+fF++r++ky++  r+ r t++gyWkatgkd+ ++  ++
  RrC14105_p1  13 APGFRFHPTDEELVMYYLKRKMCKRRLRV-NAIGVVDVYKLDPQELPrQsVLKTGDRQWFFFTPRSRKYPNAARSGRCTATGYWKATGKDRVIVY-NS 108
                  69***************************.89**************96357788999*************************************9.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + vglkktLvfy+grap+ge+tdWvmhey++
  RrC14105_p1 109 RSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139
                  9****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.29312162IPR003441NAC domain
SuperFamilySSF1019412.88E-5513162IPR003441NAC domain
PfamPF023658.9E-2614138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MAESCLKGGK FSAPGFRFHP TDEELVMYYL KRKMCKRRLR VNAIGVVDVY KLDPQELPRQ  60
SVLKTGDRQW FFFTPRSRKY PNAARSGRCT ATGYWKATGK DRVIVYNSRS VGLKKTLVFY  120
RGRAPNGERT DWVMHEYTMD EEELSRCKNA KEYYALYKLF KKSGAGPKNG EDYGAPFQEE  180
EWVDHDDDDH EVGDDIAVQE EPVPRYLDNR LLFNPVSVQL DDIEEILSGI PYAPEVPQTC  240
INGLASDIPQ VNSQEELQST LVNNSSGEFL EPLETGVFLP NVQPYNMPSS YESTEVTSAP  300
NDSGTGPFVF DKDDYIEMDD LLTSELGASL TETPQQFLDP GEFGEFNEFD QLFHDVSMFL  360
DMEPILQGDS AGPSSLSNTS DKQHQHFQVQ APENKLNSIM DPNPNPNQLT DDMWFQDDDQ  420
ALLFDQPQSI ISGAFASPSS GVNVMPGSTN LTTSVTAQDG GGGGTSPFSS ALWAFMDSIP  480
STPASACEGP INRTFVRMSS FSRMRLSGKA NGTPATTTVV AKKRSRNRGF LVLSIVGALC  540
AIFWVFIATV RASGRPVFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-451413917140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138RKMCKRRL
2522527KRSRNR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592194.10.0PREDICTED: NAC domain-containing protein 17-like
SwissprotQ9XIC50.0NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A0D3CRV00.0A0A0D3CRV0_BRAOL; Uncharacterized protein
STRINGBo6g044390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.10.0NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]