PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC14130_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 210aa MW: 23507.8 Da PI: 10.8224

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC14130_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	88.8	7.5e-28	55	114	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++VN+KQy++I++RRq+Rak+++ ++k ++++rkpy+h+SRh hAlrRpRgsgGrF RrC14130_p1 55 GTIFVNSKQYHAIIRRRQSRAKAAAvidKNKQSSRGRKPYMHHSRHLHALRRPRGSGGRF 114 689*******************999999999************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.6E-28	52	117	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.535	53	117	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.5E-21	56	78	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-22	56	114	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.5E-21	91	114	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MMVLVNSPKR VMQRVQELYL SLMELLSQCN HLAWNSDLLN NSRVMLPLNM ETEDGTIFVN 60 SKQYHAIIRR RQSRAKAAAV IDKNKQSSRG RKPYMHHSRH LHALRRPRGS GGRFLNTKSG 120 TSAKKADGTK KPQTQSQAIS QQSNSQNSEV LHPERGTMNL TTGHNVSGSE VTSMNYFLSS 180 LVHSLGGMLT PSKWTASEAA VYNGCCYFKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	2e-15	54	115	2	60	HAPB protein
4g92_A	2e-15	54	115	2	60	HAPB protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352991	2e-65	AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434875.1	1e-114	PREDICTED: nuclear transcription factor Y subunit A-2-like
Swissprot	Q9M9X4	3e-91	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A0D3AFG3	1e-104	A0A0D3AFG3_BRAOL; Uncharacterized protein
TrEMBL	A0A398AU28	1e-104	A0A398AU28_BRACM; Uncharacterized protein
STRING	Bo1g150420.1	1e-105	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	2e-84	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]