PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1414_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 549aa    MW: 60537.6 Da    PI: 6.6539
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1414_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.54.9e-1171715421374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+e+L+e+A+av++gd + a  ++  l++++s +g+p+qRl +y++e+L+arl++++ ++y+al+++e +     e ++++ +++e++P+ kf++ + N
  RrC1414_p2 171 LKEVLVEAARAVDEGDVATACGFIDVLEQMVSVSGSPIQRLGTYMAEGLRARLQGTGGNIYRALKCNEPT---GRELMSYMGVLYEICPYWKFAYTASN 266
                 5789*****************************************************************9...99999999****************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aIlea++g++++H+iDf+i qG Q++ L+++La+Rp+g+p lR+Tgv++++s   +   l  +ge+Lak+Ae++gvpfef+  ++ +  +++ e+L v
  RrC1414_p2 267 AAILEATAGDSKIHVIDFQIAQGSQYMFLIHELAKRPGGAPLLRVTGVDDSQSRyaRGGGLGLVGEKLAKMAESCGVPFEFRD-AVMSGCKVHREHLGV 364
                 **************************************************999899999************************.788899999****** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvksls.PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 +pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl  P++v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a  pr++++ri+ E+++++r+i
  RrC1414_p2 365 EPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGpPRLVTLVEQESNTNTSPFLSRFAETLDYYTAMFESIDAARPRDDRQRISAEQQCVARDI 463
                 **************************************8469********************************************************* PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 vn++ace++er+erhe l+kWr r+++aGF   p+s + a  a+ +l+ ++++ y++  ++g+l+l Wk+rp+ ++SaW+
  RrC1414_p2 464 VNMIACEERERVERHEVLGKWRVRMMMAGFVGWPVSRSSAFAASEMLKGYDKN-YKLGGSEGALYLFWKRRPMATCSAWK 542
                 ***************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.583145523IPR005202Transcription factor GRAS
PfamPF035141.7E-114171542IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MQTSQKHHSA AGLHMLYPQV HCSPQFQVID NNKNKKKNNN AFSDTTPSKE SFFTLESSTA  60
SVGPLPSYES PSVSITSGPT PFSPQASHSH SCISSDLLHP SPENMYGSSP LSGASSSHVY  120
DEAGFKSKIR ELEVSLLSGD PKVEEYSGFS PAAGKSWNWE ELLALTPQLD LKEVLVEAAR  180
AVDEGDVATA CGFIDVLEQM VSVSGSPIQR LGTYMAEGLR ARLQGTGGNI YRALKCNEPT  240
GRELMSYMGV LYEICPYWKF AYTASNAAIL EATAGDSKIH VIDFQIAQGS QYMFLIHELA  300
KRPGGAPLLR VTGVDDSQSR YARGGGLGLV GEKLAKMAES CGVPFEFRDA VMSGCKVHRE  360
HLGVEPGFAV VVNFPYVLHH MPDESVSVEN HRDRLLHLIK SLGPPRLVTL VEQESNTNTS  420
PFLSRFAETL DYYTAMFESI DAARPRDDRQ RISAEQQCVA RDIVNMIACE ERERVERHEV  480
LGKWRVRMMM AGFVGWPVSR SSAFAASEML KGYDKNYKLG GSEGALYLFW KRRPMATCSA  540
WKPNPNQIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-5220454236375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471540.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A3P5Z5Z40.0A0A3P5Z5Z4_BRACM; Uncharacterized protein
STRINGBo1g052870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13