PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1415_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

S1Fa-like

Protein Properties

Length: 91aa MW: 10717 Da PI: 10.5506

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1415_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	127.8	3.1e-40	2	66	2	66
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGva 66 +++k+e+kGlnPGlivllv+ggll++flvgn+ily+yaqknlP rkkkPvskkk+k+eklkqG++ RrC1415_p2 2 EQGKIESKGLNPGLIVLLVIGGLLVTFLVGNFILYTYAQKNLPQRKKKPVSKKKMKKEKLKQGIQ 66 5789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.6E-35	6	66	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MEQGKIESKG LNPGLIVLLV IGGLLVTFLV GNFILYTYAQ KNLPQRKKKP VSKKKMKKEK 60 LKQGIQNLER FGSFWWCKME DYFFYLMMMF S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016661	6e-63	AC016661.7 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete sequence.
GenBank	CP002686	6e-63	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104121.2	8e-20	DNA-binding protein S1FA
Refseq	XP_024026346.1	8e-20	DNA-binding protein S1FA
TrEMBL	A0A1J3J4X3	3e-21	A0A1J3J4X3_NOCCA; DNA-binding protein S1FA2
STRING	A0A087H8A9	2e-20	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2823	27	69