PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC141_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 244aa MW: 27175.2 Da PI: 7.5809

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC141_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.7	7.5e-29	38	130	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................s 66 g+kdrhsk++T +g+RdRR+Rlsa++a++++dLqd+LG+ ++sk i+WLlq+a+ + l+ + RrC141_p2 38 GGKDRHSKVCTIRGLRDRRIRLSATTAIQLYDLQDRLGLSQPSKVIDWLLQAAQNDVAMLPPLqfppgfhlnlptaaaavgesfpgifesfdI 130 68*************************************************************444444444443333333333333332220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-27	39	118	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.947	39	97	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MRTNSMGIKQ EGDNHYQTTS LSSLRQNPRI VRASRIFGGK DRHSKVCTIR GLRDRRIRLS 60 ATTAIQLYDL QDRLGLSQPS KVIDWLLQAA QNDVAMLPPL QFPPGFHLNL PTAAAAVGES 120 FPGIFESFDI GSCSSRTDQT TQRETLDLER SSLSHGFDID HHFYSNPSQS NKVYYNSSSS 180 SCHYNLGQLQ QSLLDQSCNV TVALSNNNNL NPPTVETMSS LFPRYPLFLE GGDQLQLFSS 240 NSNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-17	44	98	1	55	Putative transcription factor PCF6
5zkt_B	6e-17	44	98	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00497	DAP	Transfer from AT5G08070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241004	0.0	AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475137.1	1e-169	PREDICTED: transcription factor TCP17
Refseq	XP_018475138.1	1e-169	PREDICTED: transcription factor TCP17
Swissprot	Q9LEZ9	6e-92	TCP17_ARATH; Transcription factor TCP17
TrEMBL	A0A3P6A0R2	1e-149	A0A3P6A0R2_BRACM; Uncharacterized protein
STRING	Bo3g004670.1	1e-146	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	8e-72	TCP domain protein 17

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]