PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14207_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 127aa    MW: 14582.2 Da    PI: 6.6614
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14207_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.34.9e-26969259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                 dD ++WrKYGqKe+ g +fpr+YYrCt++   +Cp+kk+v+r +edp ++ +tY+++H+++
  RrC14207_p1  9 DDNHTWRKYGQKEILGFKFPRAYYRCTHEklyKCPAKKQVQRLDEDPYTFCVTYRSSHTCH 69
                 8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-25569IPR003657WRKY domain
SuperFamilySSF1182909.68E-24670IPR003657WRKY domain
SMARTSM007745.2E-31870IPR003657WRKY domain
PROSITE profilePS5081119.141966IPR003657WRKY domain
PfamPF031061.6E-23969IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGNMDTPPDD NHTWRKYGQK EILGFKFPRA YYRCTHEKLY KCPAKKQVQR LDEDPYTFCV  60
TYRSSHTCHF FTTSPISSTA TTDGHYGSTV VNMAEALFGN VDSVLPFGES YFDYRSLFNG  120
SGSDWDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18968968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459228.11e-90PREDICTED: WRKY transcription factor 55-like isoform X1
SwissprotQ9SHB52e-45WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A078J5N84e-81A0A078J5N8_BRANA; BnaC04g55610D protein
TrEMBLA0A0D3BXJ14e-81A0A0D3BXJ1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9D94e-81A0A3P6C9D9_BRAOL; Uncharacterized protein
STRINGBo4g114050.16e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.17e-48WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]