PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1448_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 352aa    MW: 38222.4 Da    PI: 6.608
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1448_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.64.7e-15234270135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg ++  Tp++Rrgp+g++tLCnaCGl++  +g+
  RrC1448_p1 234 CTHCGISSscTPMMRRGPSGPRTLCNACGLFWTNRGT 270
                 *********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.9E-1479114IPR010399Tify domain
PROSITE profilePS5132014.33879114IPR010399Tify domain
PfamPF062003.2E-1281113IPR010399Tify domain
PfamPF062031.2E-9148179IPR010402CCT domain
SMARTSM004011.9E-13228281IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.569228286IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-12230287No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14233275IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.11E-16234284No hitNo description
PROSITE patternPS003440234261IPR000679Zinc finger, GATA-type
PfamPF003201.6E-12234270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MFGHHTQPEI NPNQIGSSSA AVGEDHVSAS ATSAGHIPYE DMEDIPHPDS IYAASDLIPD  60
GSHLVPHRSE GSELLGSRPM EGANQLTISF RGQVYVFDAV GPEKVDAVLS LLGGSTELSS  120
VQQGMELAQQ NHMPAVVEYQ NRYSHPQRAQ SLDRFRKKRN ARCFEKKVRY GVRQEVALSQ  180
VLGHRSTLSI KVVTASGMAR NKGQFTSAKM NEGAYNSGTD QDSAQDDSRP EILCTHCGIS  240
SSCTPMMRRG PSGPRTLCNA CGLFWTNRGT LRDLSKRTEE NQMAIRPPVE GGSGADANNS  300
NCEPATVEGH AAFANGDQSS MLVARFQTLS HMERTRQHGS YEHHGTDDAC PI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0353101e-113AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds.
GenBankAK2293371e-113AK229337.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-58-N13.
GenBankAY0860381e-113AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469923.10.0PREDICTED: GATA transcription factor 25
RefseqXP_018469924.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH61e-165GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A078JAP60.0A0A078JAP6_BRANA; BnaA01g35150D protein
STRINGBo1g039000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-158GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]