PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14541_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 228aa    MW: 27213.1 Da    PI: 5.2925
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14541_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-181668456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  ++f++eq++ Le  F+++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  RrC14541_p1 16 QRRFSDEQIKSLEMRFKSETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 68
                 579*************************************************9 PP
2HD-ZIP_I/II121.25.1e-3915105292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ++rr+s+eq+k+LE+ F++e++Lep++Kv+lareLglqprqva+WFqn+RAR+ktkqlE++++ L+++y+ l+++ e+L+ke++ L +el+
  RrC14541_p1  15 NQRRFSDEQIKSLEMRFKSETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKTKQLETEFNILRQNYNDLASQFESLKKENQGLVSELH 105
                  68************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.9731070IPR001356Homeobox domain
SMARTSM003891.9E-141374IPR001356Homeobox domain
SuperFamilySSF466891.03E-161582IPR009057Homeodomain-like
PfamPF000466.9E-161668IPR001356Homeobox domain
CDDcd000862.62E-131671No hitNo description
Gene3DG3DSA:1.10.10.601.5E-171676IPR009057Homeodomain-like
PRINTSPR000316.5E-64150IPR000047Helix-turn-helix motif
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
PRINTSPR000316.5E-65066IPR000047Helix-turn-helix motif
PfamPF021833.2E-1370110IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTMKKMKKSI HNENNQRRFS DEQIKSLEMR FKSETRLEPR KKVQLARELG LQPRQVAIWF  60
QNKRARWKTK QLETEFNILR QNYNDLASQF ESLKKENQGL VSELHILNEE RQTKQDERRH  120
CCDGQGVVTL GSTDHESEKE ENRRSEPEEV RPEMEVYEKS RHDDDDGYNN NIKREYFVGF  180
EEEADHLMNI VEPADSCLTS SDDWGGFKSN TNLLDQSSSN YPWWDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481377.11e-169PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468971e-124ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A3P6CDA91e-137A0A3P6CDA9_BRACM; Uncharacterized protein
STRINGBo4g197260.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-111homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]