PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14786_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 188aa    MW: 20836.8 Da    PI: 8.911
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14786_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19145181135
         GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+  nC++++Tp+WRrgp g+ktLCnaCG+++rk+++
  RrC14786_p2 145 CTnlNCNAIDTPMWRRGPLGPKTLCNACGIKFRKEEE 181
                  66569*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-7141188IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-11143182No hitNo description
PfamPF003201.0E-16145181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-13149180IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.98E-11149178No hitNo description
PROSITE profilePS5011411.372149177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEKELDLTLR LGLPSPAVET KLSLDTPPTT NQGTNVDETH GHRHIFGNED EPIDVNMRYY  60
NLIFNHFAGI GETLNFAPFP IQPSAPVTLP ASPTRSDYVL IDVPARRAVR NSLATGNALD  120
ANANKKQRRG CGGCCGGRIG WLRKCTNLNC NAIDTPMWRR GPLGPKTLCN ACGIKFRKEE  180
ERMSKRTF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490247.11e-119PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT455e-46GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A078H4R77e-94A0A078H4R7_BRANA; BnaC03g41730D protein
STRINGBra001801.1-P2e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-49GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]